bioinformatics 8

A reproducible science workbench plugin for the DeepSeek Harness: agent-driven cells, inline figures with feedback/rerun, manifest provenance, and environment snapshots.

生物信息学「许愿式分析」插件：Python 执行器（bio_python：Biopython 全功能 + 出版级绘图）+ 57 个高频语义化工具（差异表达/GSEA、代谢建模/FBA、合成生物学设计、CRISPR、ML、文献检索、Addgene 质粒库、UniProt、单细胞 QC 等）+ 50 个 skill（1 主 skill + 17 领域配方 + 19 协议 + 5 研究方法 + 8 agent 指南）+ 零依赖自举 Python 环境（uv+venv 自动下载到插件私有目录）。用户下载安装即可许

OmicOS as a deepseek-harness (dsh) plugin — Mode A: omicos bioinformatics tools + background jobs + login commands for the dsh agent (DSH-PLUGIN.md).

Assembly-aware strawberry research evidence tools for DeepSeek Harness

蛋白质结构预测与设计插件：序列设计（ProteinMPNN/SolubleMPNN/LigandMPNN）、结构预测（ESMFold）、复合物界面筛选、序列理化打分与多样性聚类——零手动自举（本地 CPU/GPU 自适应），供 dsh-bio-genie 消费 | Protein structure prediction & design toolkit for dsh (sequence design, folding, interface screening)

Bioinformatics WDL catalog, bounded autonomous AI authoring, trusted planning, and opt-in miniwdl execution for DeepSeek Harness.

基因组尺度代谢模型（GEM）构建插件：输入细菌全基因组（蛋白FASTA，支持多质粒/多染色体），自动构建+验证+补洞+出报告（SBML + 模型卡），供 dsh-bio-genie 消费工具加载使用 | Genome-scale metabolic model builder for dsh

Claude Science-style research workbench for DeepSeek Harness: ReAct research-loop engine (research_* tools), versioned artifacts with provenance (artifact_* tools), SSH remote-compute engine for long bioinformatics jobs on workstations/HPC (remote_* tools