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bioinformatics 5

  • dsh-science-workbench v0.3.0 Verified Web UI 8

    A reproducible science workbench plugin for the DeepSeek Harness: agent-driven cells, inline figures with feedback/rerun, manifest provenance, and environment snapshots.

    dsh plugin add dsh-science-workbench
  • dsh-bio-genie v0.6.0 Verified Web UI 2

    生物信息学「许愿式分析」插件：双引擎执行器（bio_python：Biopython 全功能 + bio_r：R 4.6/Bioconductor 3.23 差异表达与组学分析）+ 高频语义化工具 + 出版级绘图 + 零依赖自举双环境（uv+venv+biopython / CRAN 安装器+BiocManager 自动下载到插件私有目录）。用户下载安装即可许愿式分析。

    dsh plugin add @dsh-bio/dsh-bio-genie
  • dsh-omicos v0.2.1 Verified Web UI 2

    OmicOS as a deepseek-harness (dsh) plugin — Mode A: omicos bioinformatics tools + background jobs + login commands for the dsh agent (DSH-PLUGIN.md).

    dsh plugin add @omicverse/dsh-omicos
  • dsh-bio-workflows v0.7.0 Verified

    Bioinformatics WDL catalog, workflow store, trusted planning, and opt-in miniwdl execution for DeepSeek Harness.

    dsh plugin add dsh-bio-workflows
  • dsh-science v0.2.0 Verified Web UI

    Claude Science-style research workbench for DeepSeek Harness: ReAct research-loop engine (research_* tools), versioned artifacts with provenance (artifact_* tools), SSH remote-compute engine for long bioinformatics jobs on workstations/HPC (remote_* tools

    dsh plugin add dsh-science